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Species belonging to selected taxon:

Allium cepa



ABOUT THIS RECORD

ID: MNEST046853
species: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR171c

Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGCCAATATC

miRNA*
ATCGGTAAAATGGATCAAT

mismatches: 11
bulges: 1

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pre-miRNA
AAATCGGTAAAATGGATCAATGGTGACACCTCTGAGAAGGCCTTGTATGAGCTGAGCTTGAAGACGACGTCCCATGGGTTTGATAACGGATTCGGGTTCA
GACGTGAACCGGTGGCAATGGAGGTGAGGACGTCTTTGAAGATGAAAGCGGATCTTAGGATGGGTTTCAACCCAAGGGAAGAAGGAGGTAACTGCTGATT
GAGCCGCGCCAATATC


dot-bracket secondary structure
.....(((....(.(((((..(((...((((((..((((.((((.((.(((((...(((.(((..(((((((((((((((((....))))))).((((((
....)))))).............))).)))))))))).))).....)))...)).)).)).)).))))..((....)).....)))))).)))..)))))
.).....)))......



SIMILARITIES
miRBase zma-MIR171n: 0.00004

PMRD ace-miR171b: 3e-120

microPC miR171: 0.0007
UniProt sp|O81316|SCL6_ARATH: 0.000000009

RFAM MIR171_1: 0.0008

Identical with: ace-miR170d from PMRD (MNEST046850)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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